Main_Quality_Relabel_GUI.py
修改一些pathlib和os.path复用的代码 包的引用改成from导入 减少打包后的程序体积 Preprocessing.py 较少不必要包的引入
This commit is contained in:
marques
parent
7b9ec0a4ac
commit
7555ca4a59
1
.gitignore
vendored
1
.gitignore
vendored
@ -252,6 +252,7 @@ ipython_config.py
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# Remove previous ipynb_checkpoints
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# git rm -r .ipynb_checkpoints/
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SaLabel/
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data/*
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logs/*
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.idea/*
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@ -11,6 +11,7 @@
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from PyQt5 import QtCore, QtGui, QtWidgets
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class Ui_MainWindow(object):
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def setupUi(self, MainWindow):
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MainWindow.setObjectName("MainWindow")
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@ -5,26 +5,26 @@
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@time:2025/1/4
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"""
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import os
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import sys
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import logging
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import time
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import numpy as np
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import pandas as pd
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import matplotlib
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import pyedflib
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import traceback
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from logging import NOTSET, getLogger, FileHandler, Formatter, StreamHandler, info, error, debug
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from time import time, strftime, localtime
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from numpy import load, nan, zeros, append, linspace, place
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from pandas import DataFrame, read_csv, read_excel, Series, concat
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from matplotlib import use
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from matplotlib import pyplot as plt, gridspec
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from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg, NavigationToolbar2QT
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from pyedflib import EdfReader
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from datetime import datetime
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from tqdm import tqdm
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from pathlib import Path
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from PyQt5 import QtCore, QtWidgets
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from PyQt5.QtWidgets import QFileDialog, QMainWindow, QMessageBox, QButtonGroup
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from matplotlib import pyplot as plt, gridspec
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from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg, NavigationToolbar2QT
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from MainWindow import Ui_MainWindow
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from utils.Preprocessing import BCG_Operation
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from PyQt5.QtCore import QCoreApplication, QThread, pyqtSignal
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from PyQt5.QtWidgets import QFileDialog, QMainWindow, QMessageBox, QButtonGroup, QApplication
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matplotlib.use("Qt5Agg") # 声明使用QT5
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from MainWindow import Ui_MainWindow
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from utils.Preprocessing import Butterworth
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use("Qt5Agg") # 声明使用QT5
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plt.rcParams['font.sans-serif'] = ['SimHei'] # 用来正常显示中文标签
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plt.rcParams['axes.unicode_minus'] = False # 用来正常显示负号
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@ -36,25 +36,25 @@ plt.rcParams['axes.unicode_minus'] = False # 用来正常显示负号
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# 'EEG A1-A2', 'Imp']
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# 设置日志
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logger = logging.getLogger()
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logger.setLevel(logging.NOTSET)
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realtime = time.strftime('%Y%m%d', time.localtime(time.time()))
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if not os.path.exists(Path("logs")):
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os.makedirs(Path("logs"))
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fh = logging.FileHandler(Path("logs") / (realtime + ".log"), mode='a')
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fh.setLevel(logging.NOTSET)
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fh.setFormatter(logging.Formatter("%(asctime)s: %(message)s"))
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logger = getLogger()
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logger.setLevel(NOTSET)
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realtime = strftime('%Y%m%d', localtime(time()))
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if not Path("logs").exists():
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Path("logs").mkdir(exist_ok=True)
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fh = FileHandler(Path("logs") / (realtime + ".log"), mode='a')
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fh.setLevel(NOTSET)
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fh.setFormatter(Formatter("%(asctime)s: %(message)s"))
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logger.addHandler(fh)
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ch = logging.StreamHandler()
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ch.setLevel(logging.NOTSET)
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ch.setFormatter(logging.Formatter("%(asctime)s: %(message)s"))
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ch = StreamHandler()
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ch.setLevel(NOTSET)
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ch.setFormatter(Formatter("%(asctime)s: %(message)s"))
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logger.addHandler(ch)
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logging.getLogger('matplotlib.font_manager').disabled = True
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logging.info("------------------------------------")
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getLogger('matplotlib.font_manager').disabled = True
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info("------------------------------------")
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class MainWindow(QMainWindow, Ui_MainWindow):
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# 可选择的通道
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base_channel = ['EEG F3-A2', 'EEG F4-A1', 'EEG C3-A2', 'EEG C4-A1', 'EEG O1-A2', 'EEG O2-A1', 'EOG Right',
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'EOG Left', 'EMG Chin', 'ECG I', 'RR', 'ECG II', 'Effort Tho', 'Flow Patient', 'Flow Patient', 'HR',
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@ -178,15 +178,23 @@ class MainWindow(QMainWindow, Ui_MainWindow):
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fileDialog.setOption(QFileDialog.ShowDirsOnly, True)
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if fileDialog.exec_() == QFileDialog.Accepted:
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self.dir_path = fileDialog.selectedFiles()[0]
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if self.dir_path:
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logging.info("Loading Data Path...")
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self.PSG_Data_Path = Path(os.path.join(self.dir_path, "PSG"))
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self.BCG_Data_Path = Path(os.path.join(self.dir_path, "BCG"))
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self.BCG_Label_Path = Path(os.path.join(self.dir_path, "BCG_label"))
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self.Artifact_Label_Path = Path(os.path.join(self.dir_path, "Artifact_label"))
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self.Artifact_Offset_Path = Path(os.path.join(self.dir_path, "Artifact_label", "20220421Artifact_offset_value.xlsx"))
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if not self.dir_path:
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info("Data Path not Exist...")
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self.textBrowser_update("操作：载入存档错误，存档不存在")
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self.msgBox.setText("载入存档错误，存档不存在")
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self.msgBox.setIcon(QMessageBox.Critical)
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self.msgBox.exec()
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return
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self.dir_path = Path(self.dir_path)
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info("Loading Data Path...")
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self.PSG_Data_Path = self.dir_path / "PSG"
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self.BCG_Data_Path = self.dir_path / "BCG"
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self.BCG_Label_Path = self.dir_path / "BCG_label"
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self.Artifact_Label_Path = self.dir_path / "Artifact_label"
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self.Artifact_Offset_Path = self.dir_path / "Artifact_label" / "20220421Artifact_offset_value.xlsx"
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if self.PSG_Data_Path.exists() and self.BCG_Data_Path.exists() and self.BCG_Label_Path.exists() and self.Artifact_Label_Path.exists() and self.Artifact_Label_Path.exists():
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sampIDs = os.listdir(self.BCG_Data_Path)
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sampIDs = self.BCG_Data_Path.glob()
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sampID_for_comboBox = []
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for sampID in sampIDs:
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sampID = sampID.replace("samp.npy", "")
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@ -195,19 +203,19 @@ class MainWindow(QMainWindow, Ui_MainWindow):
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ecg_path = self.PSG_Data_Path / f"A{str(sampID).rjust(7, '0')}.edf"
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bcg_label_path = self.BCG_Label_Path / f"export{sampID}_all.csv"
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if not bcg_path.exists():
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logging.error(f"Can't find {bcg_path}!")
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error(f"Can't find {bcg_path}!")
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self.msgBox.setText(f"找不到数据{bcg_path}")
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self.msgBox.setIcon(QMessageBox.Critical)
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self.msgBox.exec()
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return
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if not ecg_path.exists():
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logging.error(f"Can't find {ecg_path}!")
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error(f"Can't find {ecg_path}!")
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self.msgBox.setText(f"找不到数据{ecg_path}")
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self.msgBox.setIcon(QMessageBox.Critical)
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self.msgBox.exec()
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return
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if not bcg_label_path.exists():
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logging.error(f"Can't find {bcg_label_path}!")
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error(f"Can't find {bcg_label_path}!")
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self.msgBox.setText(f"找不到数据{bcg_label_path}")
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self.msgBox.setIcon(QMessageBox.Critical)
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self.msgBox.exec()
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@ -227,23 +235,19 @@ class MainWindow(QMainWindow, Ui_MainWindow):
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self.action_selectPath.setEnabled(False)
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self.pushButton_confirmLabel.setEnabled(True)
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self.pushButton_confirmLabel.setText("开始打标")
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MainWindow.setWindowTitle(self, QtCore.QCoreApplication.translate("MainWindow", "Main_Quality_Relabel_GUI - Data Path: " + self.dir_path))
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logging.info("Successfully Loaded Data Path.")
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MainWindow.setWindowTitle(self, QCoreApplication.translate("MainWindow",
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"Main_Quality_Relabel_GUI - Data Path: " + self.dir_path))
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info("Successfully Loaded Data Path.")
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self.textBrowser_update("操作：数据路径选择成功")
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else:
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logging.info("Failed to Load Data Path.")
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info("Failed to Load Data Path.")
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self.textBrowser_update("操作：数据路径选择错误，缺乏必要数据文件夹")
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self.msgBox.setText("数据路径选择错误，缺乏必要数据文件夹")
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self.msgBox.setIcon(QMessageBox.Critical)
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self.msgBox.exec()
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else:
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logging.info("Data Path not Exist...")
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self.textBrowser_update("操作：载入存档错误，存档不存在")
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self.msgBox.setText("载入存档错误，存档不存在")
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self.msgBox.setIcon(QMessageBox.Critical)
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self.msgBox.exec()
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else:
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logging.info("Canceled Loading Data Path.")
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info("Canceled Loading Data Path.")
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self.textBrowser_update("提示：数据路径选择取消")
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self.msgBox.setText("数据路径选择取消")
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self.msgBox.setIcon(QMessageBox.Warning)
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@ -264,7 +268,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
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self.pushButton_left.setEnabled(False)
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self.pushButton_right.setEnabled(True)
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self.pushButton_confirmLabel.setText("确定打标参数(S)")
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self.pushButton_confirmLabel.setShortcut(QtCore.QCoreApplication.translate("MainWindow", "S"))
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self.pushButton_confirmLabel.setShortcut(QCoreApplication.translate("MainWindow", "S"))
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self.pushButton_confirmLabel.clicked.disconnect(self.slot_btn_run)
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self.pushButton_confirmLabel.clicked.connect(self.slot_btn_confirmLabel)
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self.pushButton_quick_remark_input_waitingForTalk.setEnabled(True)
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@ -297,49 +301,61 @@ class MainWindow(QMainWindow, Ui_MainWindow):
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self.lineEdit_remark.setEnabled(True)
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self.lineEdit_correctStart.setEnabled(True)
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self.lineEdit_correctEnd.setEnabled(True)
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self.pd = pd.read_csv(Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_all.csv")), encoding="gbk")
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csv_headers = self.pd.columns.tolist()
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if not (("score" in csv_headers) and ("remark" in csv_headers) and ("correct_Start" in csv_headers) and ("correct_End") in csv_headers and ("isLabeled" in csv_headers)):
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self.pd["score"] = "-1"
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self.pd["remark"] = ""
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self.pd["correct_Start"] = "-1"
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self.pd["correct_End"] = "-1"
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self.pd["correct_EventsType"] = ""
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self.pd["isLabeled"] = "-1"
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self.pd["score"] = self.pd["score"].astype(int)
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self.pd["remark"] = self.pd["remark"].astype(str)
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self.pd["correct_Start"] = self.pd["correct_Start"].astype(int)
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self.pd["correct_End"] = self.pd["correct_End"].astype(int)
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self.pd["correct_EventsType"] = self.pd["correct_EventsType"].astype(str)
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self.pd["isLabeled"] = self.pd["isLabeled"].astype(int)
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self.df_saLabel = read_csv(
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self.BCG_Label_Path / f"export{self.comboBox_sampID.currentText()}_all.csv",
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encoding="gbk")
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csv_headers = self.df_saLabel.columns.tolist()
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if not (("score" in csv_headers) and ("remark" in csv_headers) and ("correct_Start" in csv_headers) and (
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"correct_End") in csv_headers and ("isLabeled" in csv_headers)):
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self.df_saLabel["score"] = "-1"
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self.df_saLabel["remark"] = ""
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self.df_saLabel["correct_Start"] = "-1"
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self.df_saLabel["correct_End"] = "-1"
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self.df_saLabel["correct_EventsType"] = ""
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self.df_saLabel["isLabeled"] = "-1"
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self.df_saLabel["score"] = self.df_saLabel["score"].astype(int)
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self.df_saLabel["remark"] = self.df_saLabel["remark"].astype(str)
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self.df_saLabel["correct_Start"] = self.df_saLabel["correct_Start"].astype(int)
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self.df_saLabel["correct_End"] = self.df_saLabel["correct_End"].astype(int)
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self.df_saLabel["correct_EventsType"] = self.df_saLabel["correct_EventsType"].astype(str)
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self.df_saLabel["isLabeled"] = self.df_saLabel["isLabeled"].astype(int)
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self.change_radioButton_events(self.bcg_event_label_index_list[self.plotEventIndex])
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if not Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_addNew.csv")).exists():
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self.pd_examineBySecond = pd.DataFrame(columns=self.pd.columns)
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if not Path(self.BCG_Label_Path /
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f"export{self.comboBox_sampID.currentText()}_addNew.csv").exists():
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self.pd_examineBySecond = DataFrame(columns=self.df_saLabel.columns)
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self.pd_examineBySecond["score"] = self.pd_examineBySecond["score"].astype(int)
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self.pd_examineBySecond["remark"] = self.pd_examineBySecond["remark"].astype(str)
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self.pd_examineBySecond["correct_Start"] = self.pd_examineBySecond["correct_Start"].astype(int)
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self.pd_examineBySecond["correct_End"] = self.pd_examineBySecond["correct_End"].astype(int)
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self.pd_examineBySecond["correct_EventsType"] = self.pd_examineBySecond["correct_EventsType"].astype(str)
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self.pd_examineBySecond["correct_EventsType"] = self.pd_examineBySecond["correct_EventsType"].astype(
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str)
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self.pd_examineBySecond["isLabeled"] = self.pd_examineBySecond["isLabeled"].astype(int)
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self.pd_examineBySecond.to_csv(Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_addNew.csv")), index=False, encoding="gbk")
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self.pd_examineBySecond.to_csv(
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self.BCG_Label_Path / f"export{self.comboBox_sampID.currentText()}_addNew.csv",
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index=False, encoding="gbk")
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else:
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self.pd_examineBySecond = pd.read_csv(Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_addNew.csv")), encoding="gbk")
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if (self.pd["isLabeled"] == 1).all():
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self.pd_examineBySecond = read_csv(
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self.BCG_Label_Path / f"export{self.comboBox_sampID.currentText()}_addNew.csv",
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encoding="gbk")
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if (self.df_saLabel["isLabeled"] == 1).all():
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self.checkBox_examineLabeled.setChecked(False)
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self.msgBox.setText("该份数据打标已全部完成")
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self.msgBox.setIcon(QMessageBox.Information)
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self.msgBox.exec()
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self.pd.to_csv(Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_all.csv")), mode='w', index=None, encoding="gbk")
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self.show_one_event(self.plotEventIndex, front_add_second=self.front_add_second, back_add_second=self.back_add_second)
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if not str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]) == "nan":
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self.lineEdit_remark.setText(str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]))
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self.df_saLabel.to_csv(self.BCG_Label_Path / f"export{self.comboBox_sampID.currentText()}_all.csv",
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mode='w', index=None, encoding="gbk")
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self.show_one_event(self.plotEventIndex, front_add_second=self.front_add_second,
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back_add_second=self.back_add_second)
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if not str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]) == "nan":
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self.lineEdit_remark.setText(
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str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]))
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else:
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self.lineEdit_remark.setText("")
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if str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "1":
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if str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "1":
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self.radioButton_1_class.setChecked(True)
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elif str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "2":
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elif str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "2":
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self.radioButton_2_class.setChecked(True)
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elif str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "3":
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elif str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "3":
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self.radioButton_3_class.setChecked(True)
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else:
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self.radioButton_2_class.setChecked(True)
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@ -350,20 +366,22 @@ class MainWindow(QMainWindow, Ui_MainWindow):
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self.figure.clear()
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self.plotEventIndex = self.plotEventIndex - 1
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if self.checkBox_examineLabeled.isChecked() == True:
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while self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == 1 and self.plotEventIndex > self.start_bcg_index:
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while self.df_saLabel.at[self.bcg_event_label_index_list[
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self.plotEventIndex], "isLabeled"] == 1 and self.plotEventIndex > self.start_bcg_index:
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self.plotEventIndex = self.plotEventIndex - 1
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self.show_one_event(self.plotEventIndex, front_add_second=self.front_add_second,
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back_add_second=self.back_add_second)
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if not str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]) == "nan":
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self.lineEdit_remark.setText(str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]))
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if not str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]) == "nan":
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self.lineEdit_remark.setText(
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str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]))
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else:
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self.lineEdit_remark.setText("")
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self.change_radioButton_events(self.bcg_event_label_index_list[self.plotEventIndex])
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if str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "1":
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if str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "1":
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self.radioButton_1_class.setChecked(True)
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elif str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "2":
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elif str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "2":
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self.radioButton_2_class.setChecked(True)
|
||||
elif str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "3":
|
||||
elif str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "3":
|
||||
self.radioButton_3_class.setChecked(True)
|
||||
else:
|
||||
self.radioButton_2_class.setChecked(True)
|
||||
@ -383,20 +401,23 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.figure.clear()
|
||||
self.plotEventIndex = self.plotEventIndex + 1
|
||||
if self.checkBox_examineLabeled.isChecked() == True:
|
||||
while self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == 1 and self.plotEventIndex < len(self.bcg_event_label_filtered_df) - 1:
|
||||
while self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == 1 and self.plotEventIndex < len(
|
||||
self.bcg_event_label_filtered_df) - 1:
|
||||
self.plotEventIndex = self.plotEventIndex + 1
|
||||
self.show_one_event(self.plotEventIndex, front_add_second=self.front_add_second,
|
||||
back_add_second=self.back_add_second)
|
||||
if not str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]) == "nan":
|
||||
self.lineEdit_remark.setText(str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]))
|
||||
if not str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]) == "nan":
|
||||
self.lineEdit_remark.setText(
|
||||
str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"]))
|
||||
else:
|
||||
self.lineEdit_remark.setText("")
|
||||
self.change_radioButton_events(self.bcg_event_label_index_list[self.plotEventIndex])
|
||||
if str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "1":
|
||||
if str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "1":
|
||||
self.radioButton_1_class.setChecked(True)
|
||||
elif str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "2":
|
||||
elif str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "2":
|
||||
self.radioButton_2_class.setChecked(True)
|
||||
elif str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "3":
|
||||
elif str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) == "3":
|
||||
self.radioButton_3_class.setChecked(True)
|
||||
else:
|
||||
self.radioButton_2_class.setChecked(True)
|
||||
@ -437,36 +458,59 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
elif self.radioButton_HPY.isChecked() == True:
|
||||
correct_EventsType = "Hypopnea"
|
||||
isLabeled = int(1)
|
||||
self.pd_examineBySecond = self.pd_add_new_row(self.pd_examineBySecond, score, remark, correct_Start, correct_End, correct_EventsType, isLabeled)
|
||||
self.pd_examineBySecond.to_csv(Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_addNew.csv")), mode='w', index=None, encoding="gbk")
|
||||
self.textBrowser_update("操作：保存新事件打标结果到csv。" + "score:" + str(score) + "，correct_Start:" + str(correct_Start) + "，correct_End:" + str(correct_End) + "，correct_EventsType:" + str(correct_EventsType))
|
||||
self.pd_examineBySecond = self.pd_add_new_row(self.pd_examineBySecond, score, remark, correct_Start,
|
||||
correct_End, correct_EventsType, isLabeled)
|
||||
self.pd_examineBySecond.to_csv(
|
||||
self.BCG_Label_Path / f"export{self.comboBox_sampID.currentText()}_addNew.csv",
|
||||
mode='w', index=None, encoding="gbk")
|
||||
self.textBrowser_update(
|
||||
"操作：保存新事件打标结果到csv。" + "score:" + str(score) + "，correct_Start:" + str(
|
||||
correct_Start) + "，correct_End:" + str(correct_End) + "，correct_EventsType:" + str(
|
||||
correct_EventsType))
|
||||
else:
|
||||
self.msgBox.setText("起始时间和终止时间输入错误")
|
||||
self.msgBox.setIcon(QMessageBox.Critical)
|
||||
self.msgBox.exec()
|
||||
elif self.checkBox_examineBySecond.isChecked() == False:
|
||||
elif not self.checkBox_examineBySecond.isChecked():
|
||||
if int(self.lineEdit_correctStart.text()) < int(self.lineEdit_correctEnd.text()):
|
||||
if self.radioButton_1_class.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"] = int(1)
|
||||
elif self.radioButton_2_class.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"] = int(2)
|
||||
elif self.radioButton_3_class.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"] = int(3)
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "remark"] = self.lineEdit_remark.text()
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"] = int(self.lineEdit_correctStart.text())
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"] = int(self.lineEdit_correctEnd.text())
|
||||
if self.radioButton_OSA.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Obstructive apnea"
|
||||
elif self.radioButton_CSA.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Central apnea"
|
||||
elif self.radioButton_MSA.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Mixed apnea"
|
||||
elif self.radioButton_HPY.isChecked() == True:
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Hypopnea"
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] = int(1)
|
||||
self.pd.to_csv(Path(os.path.join(self.BCG_Label_Path, f"export{self.comboBox_sampID.currentText()}_all.csv")), mode='w', index=None, encoding="gbk")
|
||||
self.textBrowser_update("操作：保存index" + str(self.plotEventIndex + 1) + "打标结果到csv。" + "score:" + str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"]) + "，correct_Start:" + str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"]) + "，correct_End:" + str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"]) + "，correct_EventsType:" + str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"]))
|
||||
if (self.pd.loc[self.bcg_event_label_index_list]["isLabeled"] == 1).all():
|
||||
if self.radioButton_1_class.isChecked():
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"] = int(1)
|
||||
elif self.radioButton_2_class.isChecked():
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"] = int(2)
|
||||
elif self.radioButton_3_class.isChecked():
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "score"] = int(3)
|
||||
self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "remark"] = self.lineEdit_remark.text()
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"] = int(
|
||||
self.lineEdit_correctStart.text())
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"] = int(
|
||||
self.lineEdit_correctEnd.text())
|
||||
if self.radioButton_OSA.isChecked():
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[
|
||||
self.plotEventIndex], "correct_EventsType"] = "Obstructive apnea"
|
||||
elif self.radioButton_CSA.isChecked():
|
||||
self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Central apnea"
|
||||
elif self.radioButton_MSA.isChecked():
|
||||
self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Mixed apnea"
|
||||
elif self.radioButton_HPY.isChecked():
|
||||
self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] = "Hypopnea"
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] = int(1)
|
||||
self.df_saLabel.to_csv(self.BCG_Label_Path / f"export{self.comboBox_sampID.currentText()}_all.csv",
|
||||
mode='w', index=None, encoding="gbk")
|
||||
self.textBrowser_update(
|
||||
"操作：保存index" + str(self.plotEventIndex + 1) + "打标结果到csv。" + "score:" + str(
|
||||
self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[
|
||||
self.plotEventIndex], "score"]) + "，correct_Start:" + str(
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[
|
||||
self.plotEventIndex], "correct_Start"]) + "，correct_End:" + str(self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[
|
||||
self.plotEventIndex], "correct_End"]) + "，correct_EventsType:" + str(
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"]))
|
||||
if (self.df_saLabel.loc[self.bcg_event_label_index_list]["isLabeled"] == 1).all():
|
||||
self.msgBox.setText("该份数据打标已全部完成")
|
||||
self.msgBox.setIcon(QMessageBox.Information)
|
||||
self.msgBox.exec()
|
||||
@ -570,7 +614,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
# +60s的槽函数
|
||||
def enable_checkBox_examineLabeled(self):
|
||||
if self.checkBox_examineLabeled.isChecked():
|
||||
if (self.pd.loc[self.bcg_event_label_index_list]["isLabeled"] == 1).all():
|
||||
if (self.df_saLabel.loc[self.bcg_event_label_index_list]["isLabeled"] == 1).all():
|
||||
self.checkBox_examineLabeled.setChecked(False)
|
||||
self.msgBox.setText("该份数据打标已全部完成")
|
||||
self.msgBox.setIcon(QMessageBox.Information)
|
||||
@ -636,23 +680,23 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
|
||||
# 修改了事件类型单选框后执行的函数
|
||||
def change_radioButton_events(self, index):
|
||||
if not (self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == -1):
|
||||
if self.pd.at[index, "correct_EventsType"] == "Obstructive apnea":
|
||||
if not (self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == -1):
|
||||
if self.df_saLabel.at[index, "correct_EventsType"] == "Obstructive apnea":
|
||||
self.radioButton_OSA.setChecked(True)
|
||||
elif self.pd.at[index, "correct_EventsType"] == "Central apnea":
|
||||
elif self.df_saLabel.at[index, "correct_EventsType"] == "Central apnea":
|
||||
self.radioButton_CSA.setChecked(True)
|
||||
elif self.pd.at[index, "correct_EventsType"] == "Mixed apnea":
|
||||
elif self.df_saLabel.at[index, "correct_EventsType"] == "Mixed apnea":
|
||||
self.radioButton_MSA.setChecked(True)
|
||||
elif self.pd.at[index, "correct_EventsType"] == "Hypopnea":
|
||||
elif self.df_saLabel.at[index, "correct_EventsType"] == "Hypopnea":
|
||||
self.radioButton_HPY.setChecked(True)
|
||||
else:
|
||||
if self.pd.at[index, "Event type"] == "Obstructive apnea":
|
||||
if self.df_saLabel.at[index, "Event type"] == "Obstructive apnea":
|
||||
self.radioButton_OSA.setChecked(True)
|
||||
elif self.pd.at[index, "Event type"] == "Central apnea":
|
||||
elif self.df_saLabel.at[index, "Event type"] == "Central apnea":
|
||||
self.radioButton_CSA.setChecked(True)
|
||||
elif self.pd.at[index, "Event type"] == "Mixed apnea":
|
||||
elif self.df_saLabel.at[index, "Event type"] == "Mixed apnea":
|
||||
self.radioButton_MSA.setChecked(True)
|
||||
elif self.pd.at[index, "Event type"] == "Hypopnea":
|
||||
elif self.df_saLabel.at[index, "Event type"] == "Hypopnea":
|
||||
self.radioButton_HPY.setChecked(True)
|
||||
|
||||
# 点击开始打标按钮后的初始化变量函数
|
||||
@ -684,7 +728,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
def check_channel(self):
|
||||
for i in self.channel_list:
|
||||
if i not in self.base_channel:
|
||||
logging.debug(f"{i} 不存在于常见通道名中")
|
||||
debug(f"{i} 不存在于常见通道名中")
|
||||
print(f"常见通道名：{self.channel_list}")
|
||||
|
||||
def set_focus_event_list(self):
|
||||
@ -704,19 +748,19 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
ecg_path = self.PSG_Data_Path / f"A{str(self.sampNo).rjust(7, '0')}.edf"
|
||||
|
||||
if not bcg_path.exists():
|
||||
logging.error(f"Can't find {bcg_path} !")
|
||||
error(f"Can't find {bcg_path} !")
|
||||
raise FileNotFoundError(f"Can't find {bcg_path} !")
|
||||
|
||||
if not ecg_path.exists():
|
||||
logging.error(f"Can't find {ecg_path} !")
|
||||
error(f"Can't find {ecg_path} !")
|
||||
raise FileNotFoundError(f"Can't find {ecg_path} !")
|
||||
|
||||
with pyedflib.EdfReader(str(ecg_path.resolve())) as file:
|
||||
with EdfReader(str(ecg_path.resolve())) as file:
|
||||
signal_num = file.signals_in_file
|
||||
logging.debug(f"{self.sampNo} EDF file signal number is {signal_num}")
|
||||
debug(f"{self.sampNo} EDF file signal number is {signal_num}")
|
||||
|
||||
signal_label = file.getSignalLabels()
|
||||
logging.debug(f"{self.sampNo} EDF file signal label : {signal_label}")
|
||||
debug(f"{self.sampNo} EDF file signal label : {signal_label}")
|
||||
|
||||
# 打印PSG信息
|
||||
file.file_info_long()
|
||||
@ -724,7 +768,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
# sub_index 用于区分两个flow patient
|
||||
sub_index = 1
|
||||
|
||||
logging.info("Loading PSG signal...")
|
||||
info("Loading PSG signal...")
|
||||
self.textBrowser_update("提示：正在加载PSG信号")
|
||||
for i, index in enumerate(signal_label):
|
||||
# 仅加载选中的通道
|
||||
@ -744,44 +788,43 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
elif sample_frequency > self.frequency:
|
||||
signal = signal[::int(sample_frequency / self.frequency)]
|
||||
self.signal_select[index] = signal
|
||||
logging.info(f"Finished load PSG: {index}")
|
||||
info(f"Finished load PSG: {index}")
|
||||
self.textBrowser_update("提示：完成加载PSG信号")
|
||||
|
||||
# 加载心晓信号
|
||||
logging.info("Loading XinXiao signal...")
|
||||
info("Loading XinXiao signal...")
|
||||
self.textBrowser_update("提示：正在加载心晓信号")
|
||||
signal = np.load(bcg_path)
|
||||
preprocessing = BCG_Operation(sample_rate=self.bcg_frequency)
|
||||
signal = load(bcg_path)
|
||||
# 20Hz低通去噪
|
||||
signal1 = preprocessing.Butterworth(signal, 'lowpass', low_cut=20, order=3)
|
||||
signal1 = Butterworth(signal, self.bcg_frequency, 'lowpass', low_cut=20, order=3)
|
||||
# 0.7Hz 低通提取呼吸
|
||||
signal2 = preprocessing.Butterworth(signal, 'lowpass', low_cut=0.7, order=3)
|
||||
signal2 = Butterworth(signal, self.bcg_frequency, 'lowpass', low_cut=0.7, order=3)
|
||||
|
||||
# 进行降采样
|
||||
signal1 = signal1[::int(self.bcg_frequency / self.frequency)]
|
||||
signal2 = signal2[::int(self.bcg_frequency / self.frequency)]
|
||||
|
||||
# 根据心晓事件长度生成事件记录
|
||||
self.bcg_event_label = np.zeros(len(signal) + self.extend_second * self.frequency)
|
||||
self.bcg_event_label = zeros(len(signal) + self.extend_second * self.frequency)
|
||||
self.signal_select['orgdata'] = signal1
|
||||
self.signal_select['0.7lowpass_resp'] = signal2
|
||||
|
||||
for signal_key in self.signal_select.keys():
|
||||
self.signal_select[signal_key] = np.append(self.signal_select[signal_key],
|
||||
self.signal_select[signal_key] = append(self.signal_select[signal_key],
|
||||
self.signal_select[signal_key].mean().astype(int).repeat(
|
||||
self.extend_second * self.frequency))
|
||||
logging.info("Finished load XinXiao signal")
|
||||
info("Finished load XinXiao signal")
|
||||
self.textBrowser_update("提示：完成加载心晓信号")
|
||||
|
||||
def read_event(self):
|
||||
bcg_label_path = self.BCG_Label_Path / f"export{self.sampNo}_all.csv"
|
||||
|
||||
if not bcg_label_path.exists():
|
||||
logging.error(f"Can't find {bcg_label_path} !")
|
||||
error(f"Can't find {bcg_label_path} !")
|
||||
raise FileNotFoundError(f"Can't find {bcg_label_path} !")
|
||||
|
||||
# 读取心晓事件
|
||||
df = pd.read_csv(bcg_label_path, encoding="gbk")
|
||||
df = read_csv(bcg_label_path, encoding="gbk")
|
||||
df["Start"] = df["Start"].astype("int")
|
||||
df["End"] = df["End"].astype("int")
|
||||
self.bcg_event_label_df = df
|
||||
@ -791,7 +834,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
df2 = df2.sort_values(by='Epoch')
|
||||
self.bcg_event_label_filtered_df = df2
|
||||
self.bcg_event_label_index_list = df2.index.tolist()
|
||||
logging.info("Traversaling XinXiao events...")
|
||||
info("Traversaling XinXiao events...")
|
||||
self.textBrowser_update("提示：正在遍历心晓事件")
|
||||
for one_data in tqdm(df.index):
|
||||
one_data = df.loc[one_data]
|
||||
@ -806,16 +849,16 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.bcg_event_label[SP:EP] = 3
|
||||
elif one_data["Event type"] == "Mixed apnea":
|
||||
self.bcg_event_label[SP:EP] = 4
|
||||
logging.info("Finished Traversal XinXiao events")
|
||||
info("Finished Traversal XinXiao events")
|
||||
self.textBrowser_update("提示：完成遍历心晓事件")
|
||||
|
||||
def read_artifact_label(self):
|
||||
all_offset_length = pd.read_excel(self.Artifact_Offset_Path)
|
||||
all_offset_length = read_excel(self.Artifact_Offset_Path)
|
||||
offset_length = all_offset_length[all_offset_length['数据编号'] == self.sampNo]['from_code'].values[0]
|
||||
artifact_label_path = self.Artifact_Label_Path / f"Artifact_{self.sampNo}.txt"
|
||||
artifact_label = pd.read_csv(artifact_label_path, header=None).to_numpy().reshape(-1, 4)
|
||||
artifact_label = read_csv(artifact_label_path, header=None).to_numpy().reshape(-1, 4)
|
||||
|
||||
self.artifact_event_label = np.zeros(len(self.bcg_event_label) + self.extend_second * self.frequency)
|
||||
self.artifact_event_label = zeros(len(self.bcg_event_label) + self.extend_second * self.frequency)
|
||||
|
||||
for i, artifact_type, SP, EP in artifact_label:
|
||||
SP = (int(SP) + offset_length) // (1000 // self.frequency)
|
||||
@ -849,12 +892,10 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.bcg_EP = bcg_EP
|
||||
bcg_duration = bcg_EP - bcg_SP
|
||||
|
||||
logging.info(f"sampNo:{self.sampNo} "
|
||||
info(f"sampNo:{self.sampNo} "
|
||||
f"bcg[index:{bcg_index} epoch:{one_bcg_data['Epoch']} event:{one_bcg_data['Event type']}] "
|
||||
f"ecg:[index:{bcg_index} epoch:{one_bcg_data['Epoch']} event:{one_bcg_data['Event type']}]")
|
||||
|
||||
|
||||
|
||||
# 进行向两边延展
|
||||
bcg_SP = bcg_SP - front_add_second
|
||||
bcg_EP = bcg_EP + back_add_second
|
||||
@ -867,11 +908,15 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
plt.xticks([])
|
||||
plt.yticks([])
|
||||
|
||||
if not (self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == -1):
|
||||
bcg_duration_new = self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"] - self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"]
|
||||
self.lineEdit_correctStart.setText(str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"]))
|
||||
self.lineEdit_correctEnd.setText(str(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"]))
|
||||
self.label_BCG_event.setText(f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)} "
|
||||
if not (self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "isLabeled"] == -1):
|
||||
bcg_duration_new = self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"] - \
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"]
|
||||
self.lineEdit_correctStart.setText(
|
||||
str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"]))
|
||||
self.lineEdit_correctEnd.setText(
|
||||
str(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"]))
|
||||
self.label_BCG_event.setText(
|
||||
f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)} "
|
||||
f"Epoch:{one_bcg_data['Epoch']} Duration:{bcg_duration}s New Duration:{bcg_duration_new}s")
|
||||
else:
|
||||
bcg_duration_new = -1
|
||||
@ -883,20 +928,25 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
|
||||
# 绘制 Flow1
|
||||
self.ax0 = self.figure.add_subplot(gs[0])
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Flow T", bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Flow T", bcg_duration_new=bcg_duration_new,
|
||||
show_mode="one")
|
||||
|
||||
# 绘制 Flow2
|
||||
self.ax1 = self.figure.add_subplot(gs[1], sharex=self.ax0)
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Flow P", bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Flow P", bcg_duration_new=bcg_duration_new,
|
||||
show_mode="one")
|
||||
|
||||
self.ax2 = self.figure.add_subplot(gs[2], sharex=self.ax0)
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Effort Tho", bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Effort Tho", bcg_duration_new=bcg_duration_new,
|
||||
show_mode="one")
|
||||
|
||||
self.ax3 = self.figure.add_subplot(gs[3], sharex=self.ax0)
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Effort Abd", bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="Effort Abd", bcg_duration_new=bcg_duration_new,
|
||||
show_mode="one")
|
||||
|
||||
self.ax4 = self.figure.add_subplot(gs[4], sharex=self.ax0)
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="SpO2", event_code=[5], bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="SpO2", event_code=[5],
|
||||
bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
|
||||
self.ax5 = self.figure.add_subplot(gs[5], sharex=self.ax0)
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="orgdata",
|
||||
@ -907,7 +957,8 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="0.7lowpass_resp",
|
||||
event_code=[6, 7, 8, 9, 10, 1, 2, 3, 4],
|
||||
event_show_under=False,
|
||||
title=f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)}", bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
title=f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)}",
|
||||
bcg_duration_new=bcg_duration_new, show_mode="one")
|
||||
|
||||
# figManager = plt.get_current_fig_manager()
|
||||
# figManager.window.showMaximized()
|
||||
@ -915,7 +966,8 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.ax0.callbacks.connect('xlim_changed', lambda ax: self.on_xlim_change(ax))
|
||||
|
||||
def plt_channel(self, plt_, SP, EP, channel, event_code=[1, 2, 3, 4], event_show_under=False,
|
||||
ax_top=True, ax_bottom=True, ax_left=True, ax_right=True, title=None, bcg_duration_new=-1, show_mode=None):
|
||||
ax_top=True, ax_bottom=True, ax_left=True, ax_right=True, title=None, bcg_duration_new=-1,
|
||||
show_mode=None):
|
||||
"""
|
||||
:param plt_:
|
||||
:param SP: 显示开始秒数
|
||||
@ -931,7 +983,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
"""
|
||||
linestyle = "-"
|
||||
SP = 0 if SP < 0 else SP
|
||||
plt_.plot(np.linspace(SP, EP, (EP - SP) * self.frequency),
|
||||
plt_.plot(linspace(SP, EP, (EP - SP) * self.frequency),
|
||||
self.signal_select[channel][SP * self.frequency:EP * self.frequency], label=channel,
|
||||
color=self.color_cycle[0])
|
||||
|
||||
@ -951,12 +1003,12 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
min_point = self.signal_select[channel][SP * self.frequency:EP * self.frequency].min()
|
||||
len_segment = EP * self.frequency - SP * self.frequency
|
||||
y = (min_point.repeat(len_segment) * mask).astype('float')
|
||||
np.place(y, y == 0, np.nan)
|
||||
place(y, y == 0, nan)
|
||||
else:
|
||||
y = (self.signal_select[channel][SP * self.frequency:EP * self.frequency] * mask).astype('float')
|
||||
|
||||
np.place(y, y == 0, np.nan)
|
||||
plt_.plot(np.linspace(SP, EP, (EP - SP) * self.frequency), y, color=self.color_cycle[j],
|
||||
place(y, y == 0, nan)
|
||||
plt_.plot(linspace(SP, EP, (EP - SP) * self.frequency), y, color=self.color_cycle[j],
|
||||
linestyle=linestyle)
|
||||
plt_.legend(fontsize=8, loc=1)
|
||||
if title is not None:
|
||||
@ -972,41 +1024,57 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
# 绘制半透明矩形框
|
||||
if show_mode == "one":
|
||||
if not (bcg_duration_new == -1):
|
||||
if self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Obstructive apnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"], color='red',
|
||||
alpha=0.3)
|
||||
elif self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Central apnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"], color='blue',
|
||||
alpha=0.3)
|
||||
elif self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Mixed apnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"], color='gray',
|
||||
alpha=0.3)
|
||||
elif self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Hypopnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"], color='pink',
|
||||
alpha=0.3)
|
||||
else:
|
||||
if self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Obstructive apnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
if self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Obstructive apnea":
|
||||
ax.axvspan(
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"],
|
||||
color='red',
|
||||
alpha=0.3)
|
||||
elif self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Central apnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
elif self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Central apnea":
|
||||
ax.axvspan(
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"],
|
||||
color='blue',
|
||||
alpha=0.3)
|
||||
elif self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Mixed apnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
elif self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Mixed apnea":
|
||||
ax.axvspan(
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"],
|
||||
color='gray',
|
||||
alpha=0.3)
|
||||
elif self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Hypopnea":
|
||||
ax.axvspan(self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.pd.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
elif self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "correct_EventsType"] == "Hypopnea":
|
||||
ax.axvspan(
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "correct_End"],
|
||||
color='pink',
|
||||
alpha=0.3)
|
||||
else:
|
||||
if self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Obstructive apnea":
|
||||
ax.axvspan(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
color='red',
|
||||
alpha=0.3)
|
||||
elif self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Central apnea":
|
||||
ax.axvspan(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
color='blue',
|
||||
alpha=0.3)
|
||||
elif self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Mixed apnea":
|
||||
ax.axvspan(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
color='gray',
|
||||
alpha=0.3)
|
||||
elif self.df_saLabel.at[
|
||||
self.bcg_event_label_index_list[self.plotEventIndex], "Event type"] == "Hypopnea":
|
||||
ax.axvspan(self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "Start"],
|
||||
self.df_saLabel.at[self.bcg_event_label_index_list[self.plotEventIndex], "End"],
|
||||
color='pink',
|
||||
alpha=0.3)
|
||||
# xticks = [[]] if xticks else [range(SP, EP, 5), [str(i) for i in range(0, (EP - SP), 5)]]
|
||||
@ -1030,7 +1098,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
bcg_EP = one_bcg_data["End"]
|
||||
bcg_duration = bcg_EP - bcg_SP
|
||||
|
||||
logging.info(f"sampNo:{self.sampNo} "
|
||||
info(f"sampNo:{self.sampNo} "
|
||||
f"bcg[index:{bcg_index} epoch:{one_bcg_data['Epoch']} event:{one_bcg_data['Event type']}] "
|
||||
f"ecg:[index:{bcg_index} epoch:{one_bcg_data['Epoch']} event:{one_bcg_data['Event type']}]")
|
||||
|
||||
@ -1077,7 +1145,8 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.plt_channel(plt_=plt, SP=bcg_SP, EP=bcg_EP, channel="0.7lowpass_resp",
|
||||
event_code=[6, 7, 8, 9, 10, 1, 2, 3, 4],
|
||||
event_show_under=False,
|
||||
title=f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)}", show_mode="new")
|
||||
title=f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)}",
|
||||
show_mode="new")
|
||||
|
||||
self.label_BCG_event.setText(
|
||||
f"sampNo:{self.sampNo} Index:{bcg_index + 1}/{len(self.bcg_event_label_filtered_df)} "
|
||||
@ -1088,20 +1157,21 @@ class MainWindow(QMainWindow, Ui_MainWindow):
|
||||
self.canvas.draw()
|
||||
self.ax0.callbacks.connect('xlim_changed', lambda ax: self.on_xlim_change(ax))
|
||||
|
||||
|
||||
def pd_add_new_row(self, df, score: int, remark: str, correct_Start: int, correct_End: int, correct_EventsType: str, isLabeled: int):
|
||||
new_row = pd.Series(index=df.columns, data=np.nan)
|
||||
def pd_add_new_row(self, df, score: int, remark: str, correct_Start: int, correct_End: int, correct_EventsType: str,
|
||||
isLabeled: int):
|
||||
new_row = Series(index=df.columns, data=nan)
|
||||
new_row["score"] = score
|
||||
new_row["remark"] = remark
|
||||
new_row["correct_Start"] = correct_Start
|
||||
new_row["correct_End"] = correct_End
|
||||
new_row["correct_EventsType"] = correct_EventsType
|
||||
new_row["isLabeled"] = isLabeled
|
||||
return pd.concat([df, pd.DataFrame([new_row])], ignore_index=True)
|
||||
return concat([df, DataFrame([new_row])], ignore_index=True)
|
||||
|
||||
|
||||
# 此线程类用于更新textBrowser的内容
|
||||
class Thread_textbrowserUpdate(QtCore.QThread):
|
||||
trigger = QtCore.pyqtSignal(str)
|
||||
class Thread_textbrowserUpdate(QThread):
|
||||
trigger = pyqtSignal(str)
|
||||
|
||||
def __init__(self):
|
||||
super(Thread_textbrowserUpdate, self).__init__()
|
||||
@ -1109,6 +1179,7 @@ class Thread_textbrowserUpdate(QtCore.QThread):
|
||||
def run_(self, message):
|
||||
self.trigger.emit(message)
|
||||
|
||||
|
||||
# 此类用于继承matplot的NavigationToolbar类，然后写回调函数
|
||||
class CustomNavigationToolbar(NavigationToolbar2QT):
|
||||
def __init__(self, canvas, parent, callback):
|
||||
@ -1120,9 +1191,10 @@ class CustomNavigationToolbar(NavigationToolbar2QT):
|
||||
if self.callback:
|
||||
self.callback() # 执行自定义回调
|
||||
|
||||
|
||||
# 主函数
|
||||
if __name__ == '__main__':
|
||||
app = QtWidgets.QApplication(sys.argv)
|
||||
app = QApplication(sys.argv)
|
||||
mainWindow = MainWindow()
|
||||
mainWindow.show()
|
||||
sys.exit(app.exec_())
|
||||
|
||||
@ -40,7 +40,7 @@ df_PSG_label['End'] = df_PSG_label['Start'] + df_PSG_label['Duration'].astype(fl
|
||||
print(df_PSG_label)
|
||||
|
||||
# 写入csv文件
|
||||
df_PSG_label.to_csv(r"E:\data_annotation\6SleepApnea_annotation_GUI_demo\data\BCG_label\export" + str(sampID) + "_all.csv", index=False, encoding="gbk")
|
||||
df_PSG_label.to_csv(dir_path + r"\BCG_label\export" + str(sampID) + "_all.csv", index=False, encoding="gbk")
|
||||
|
||||
# 打印结果
|
||||
print("sampID_" + str(sampID) + "写入csv成功")
|
||||
@ -6,80 +6,9 @@
|
||||
@ illustration: Pre-processing
|
||||
"""
|
||||
|
||||
import sys
|
||||
import numpy as np
|
||||
import pandas as pd
|
||||
import matplotlib.pyplot as plt
|
||||
from scipy.signal import butter, lfilter, filtfilt
|
||||
|
||||
import pywt
|
||||
from scipy import signal
|
||||
from scipy import fftpack
|
||||
|
||||
|
||||
def Dilate(x, N, g, M):
|
||||
returndata = np.array([])
|
||||
for num in range(N - M + 1):
|
||||
returndata = np.append(returndata, np.min(np.array(x[num:num + M]) - np.array(g)))
|
||||
return returndata
|
||||
|
||||
|
||||
def Eorde(x, N, g, M):
|
||||
returndata = np.array([])
|
||||
for num in range(N - M + 1):
|
||||
returndata = np.append(returndata, np.max(np.array(x[num:num + M]) - np.array(g)))
|
||||
return returndata
|
||||
|
||||
|
||||
def fin_turn(data, peak):
|
||||
if len(data) == 0 or len(peak) == 0: return peak
|
||||
return_peak = []
|
||||
for p in peak:
|
||||
minx, maxx = max(0, p - 100), min(len(data), p + 100)
|
||||
return_peak.append(minx + np.argmax(data[minx: maxx]))
|
||||
return return_peak
|
||||
|
||||
|
||||
class BCG_Operation():
|
||||
def __init__(self, sample_rate=1000):
|
||||
self.sample_rate = sample_rate
|
||||
|
||||
def down_sample(self, data=None, down_radio=10):
|
||||
if data is None:
|
||||
raise ValueError("data is None, please given an real value!")
|
||||
data = data[:len(data) // down_radio * down_radio].reshape(-1, down_radio)[:, 0]
|
||||
self.sample_rate = self.sample_rate / down_radio
|
||||
return data
|
||||
|
||||
def Splitwin(self, data=None, len_win=None, coverage=1.0, calculate_to_end=False):
|
||||
"""
|
||||
分窗
|
||||
:param len_win: length of window
|
||||
:return: signal windows
|
||||
"""
|
||||
if (len_win is None) or (data is None):
|
||||
raise ValueError("length of window or data is None, please given an real value!")
|
||||
else:
|
||||
length = len_win * self.sample_rate # number point of a window
|
||||
# step of split windows
|
||||
step = length * coverage
|
||||
start = 0
|
||||
Splitdata = []
|
||||
while (len(data) - start >= length):
|
||||
Splitdata.append(data[int(start):int(start + length)])
|
||||
start += step
|
||||
if calculate_to_end and (len(data) - start > 2000):
|
||||
remain = len(data) - start
|
||||
start = start - step
|
||||
step = int(remain / 2000)
|
||||
start = start + step * 2000
|
||||
Splitdata.append(data[int(start):int(start + length)])
|
||||
return np.array(Splitdata), step
|
||||
elif calculate_to_end:
|
||||
return np.array(Splitdata), 0
|
||||
else:
|
||||
return np.array(Splitdata)
|
||||
|
||||
def Butterworth(self, data, type, low_cut=0.0, high_cut=0.0, order=10):
|
||||
def Butterworth(data, sample_rate, type, low_cut=0.0, high_cut=0.0, order=10):
|
||||
"""
|
||||
:param type: Type of Butter. filter, lowpass, bandpass, ...
|
||||
:param lowcut: Low cutoff frequency
|
||||
@ -88,92 +17,16 @@ class BCG_Operation():
|
||||
:return: Signal after filtering
|
||||
"""
|
||||
if type == "lowpass": # 低通滤波处理
|
||||
b, a = signal.butter(order, low_cut / (self.sample_rate * 0.5), btype='lowpass')
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
b, a = butter(order, low_cut / (sample_rate * 0.5), btype='lowpass', output='ba')
|
||||
return filtfilt(b, a, data)
|
||||
elif type == "bandpass": # 带通滤波处理
|
||||
low = low_cut / (self.sample_rate * 0.5)
|
||||
high = high_cut / (self.sample_rate * 0.5)
|
||||
b, a = signal.butter(order, [low, high], btype='bandpass')
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
low = low_cut / (sample_rate * 0.5)
|
||||
high = high_cut / (sample_rate * 0.5)
|
||||
b, a = butter(order, [low, high], btype='bandpass', output='ba')
|
||||
return filtfilt(b, a, data)
|
||||
elif type == "highpass": # 高通滤波处理
|
||||
b, a = signal.butter(order, high_cut / (self.sample_rate * 0.5), btype='highpass')
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
b, a = butter(order, high_cut / (sample_rate * 0.5), btype='highpass', output='ba')
|
||||
return filtfilt(b, a, data)
|
||||
else: # 警告,滤波器类型必须有
|
||||
raise ValueError("Please choose a type of fliter")
|
||||
|
||||
def MorphologicalFilter(self, data=None, M=200, get_bre=False):
|
||||
"""
|
||||
:param data: Input signal
|
||||
:param M: Length of structural element
|
||||
:return: Signal after filter
|
||||
"""
|
||||
if not data.any():
|
||||
raise ValueError("The input data is None, please given real value data")
|
||||
g = np.ones(M)
|
||||
Data_pre = np.insert(data, 0, np.zeros(M))
|
||||
Data_pre = np.insert(Data_pre, -1, np.zeros(M))
|
||||
# Opening: 腐蚀 + 膨胀
|
||||
out1 = Eorde(Data_pre, len(Data_pre), g, M)
|
||||
out2 = Dilate(out1, len(out1), g, M)
|
||||
out2 = np.insert(out2, 0, np.zeros(M - 2))
|
||||
# Closing: 膨胀 + 腐蚀
|
||||
out5 = Dilate(Data_pre, len(Data_pre), g, M)
|
||||
out6 = Eorde(out5, len(out5), g, M)
|
||||
out6 = np.insert(out6, 0, np.zeros(M - 2))
|
||||
|
||||
baseline = (out2 + out6) / 2
|
||||
# -------------------------保留剩余价值------------------------
|
||||
data_filtered = Data_pre[:len(baseline)] - baseline
|
||||
data_filtered = data_filtered[M: M + len(data)]
|
||||
baseline = baseline[M:]
|
||||
data_filtered[-1] = data_filtered[-2] = data_filtered[-3]
|
||||
baseline[-1] = baseline[-2] = baseline[-3]
|
||||
if get_bre:
|
||||
return data_filtered, baseline
|
||||
else:
|
||||
return data_filtered
|
||||
|
||||
def Iirnotch(self, data=None, cut_fre=50, quality=3):
|
||||
"""陷波器"""
|
||||
b, a = signal.iirnotch(cut_fre / (self.sample_rate * 0.5), quality)
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
|
||||
def ChebyFilter(self, data, rp=1, type=None, low_cut=0, high_cut=0, order=10):
|
||||
"""
|
||||
切比雪夫滤波器
|
||||
:param data: Input signal
|
||||
:param rp: The maximum ripple allowed
|
||||
:param type: 'lowpass', 'bandpass, 'highpass'
|
||||
:param low_cut: Low cut-off fre
|
||||
:param high_cut: High cut-off fre
|
||||
:param order: The order of filter
|
||||
:return: Signal after filter
|
||||
"""
|
||||
if type == 'lowpass':
|
||||
b, a = signal.cheby1(order, rp, low_cut, btype='lowpass', fs=self.sample_rate)
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
elif type == 'bandpass':
|
||||
b, a = signal.cheby1(order, rp, [low_cut, high_cut], btype='bandpass', fs=self.sample_rate)
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
elif type == 'highpass':
|
||||
b, a = signal.cheby1(order, rp, high_cut, btype='highpass', fs=self.sample_rate)
|
||||
return signal.filtfilt(b, a, np.array(data))
|
||||
else:
|
||||
raise ValueError("The type of filter is None, please given the real value!")
|
||||
|
||||
def Envelope(self, data):
|
||||
"""取信号包络"""
|
||||
if len(data) <= 1: raise ValueError("Wrong input data")
|
||||
hx = fftpack.hilbert(data)
|
||||
return np.sqrt(hx ** 2, data ** 2)
|
||||
|
||||
def wavelet_trans(self, data, c_level=['aaa', 'aad'], wavelet='db4', mode='symmetric', maxlevel=10):
|
||||
wp = pywt.WaveletPacket(data=data, wavelet=wavelet, mode=mode, maxlevel=maxlevel)
|
||||
new_wp = pywt.WaveletPacket(data=None, wavelet=wavelet, mode=mode)
|
||||
for c in c_level:
|
||||
new_wp[c] = wp[c]
|
||||
return new_wp.reconstruct()
|
||||
|
||||
# def em_decomposition(self, data):
|
||||
# from pyhht.emd import EMD
|
||||
# return EMD(data).decompose()
|
||||
|
||||
Loading…
Reference in New Issue
Block a user